TSS: Rfhg 93418.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000297063.10:46 BC028678:84 ENST00000429651.1:85 NM_001100425.2:-186 | |||
|annotation=5' UTR (NM_001100425, exon 1 of 7) | |annotation=5' UTR (NM_001100425, exon 1 of 7) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=KIAA0895 | |gene_description=KIAA0895 | ||
|gene_id=23366 | |gene_id=23366 | ||
|gene_name= | |gene_name=microtubule associated tyrosine carboxypeptidase 2 | ||
|gene_source=HGNC:22206 | |gene_source=HGNC:22206 | ||
|gene_symbol=MATCAP2 | |gene_symbol=MATCAP2 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:22206 | |hgnc_mgi_id=HGNC:22206 | ||
|methods=TSS_database | |||
|nearest_ensembl=ENSG00000164542 | |nearest_ensembl=ENSG00000164542 | ||
|nearest_promoter_id=NM_001100425 | |nearest_promoter_id=NM_001100425 | ||
|nearest_refseq=NM_015314 | |nearest_refseq=NM_015314 | ||
|nearest_transcripts=BC028678:84 ENST00000429651.1:85 NM_001100425.2:-186 | |||
|nearest_unigene=Hs.6224 | |nearest_unigene=Hs.6224 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start=36390171 | |start=36390171 | ||
Latest revision as of 04:47, 16 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3966288,EH38E2548445) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 186 |
|---|---|
| Nearest PromoterID: | NM_001100425 |
| Entrez ID: | 23366 |
| Nearest Unigene: | Hs.6224 |
| Nearest Refseq: | NM_015314 |
| Nearest Ensembl: | ENSG00000164542 |
| Gene Name: | microtubule associated tyrosine carboxypeptidase 2 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.