TSS: Rfhg 96064.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001366867.1:0 ENST00000356860.8:130 NM_000722.4:130 NM_001302890.2:130 ENST00000423588.1:191 BC051339:191 ENST00000356253.9:192 BC117468:417 BC117470:417 M76559:418 | |||
|annotation=promoter-TSS (NM_001302890) | |annotation=promoter-TSS (NM_001302890) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=calcium voltage-gated channel auxiliary subunit alpha2delta 1 | |gene_description=calcium voltage-gated channel auxiliary subunit alpha2delta 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000153956 | |nearest_ensembl=ENSG00000153956 | ||
|nearest_promoter_id=NM_001366867 | |nearest_promoter_id=NM_001366867 | ||
|nearest_refseq=NM_000722 | |nearest_refseq=NM_000722 | ||
|nearest_transcripts=ENST00000356860.8:130 NM_000722.4:130 NM_001302890.2:130 ENST00000423588.1:191 BC051339:191 ENST00000356253.9:192 BC117468:417 BC117470:417 M76559:418 | |||
|nearest_unigene=Hs.282151 | |nearest_unigene=Hs.282151 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=82443907 | |start=82443907 | ||
Latest revision as of 05:35, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3995739,EH38E2567821) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NM_001366867 |
| Entrez ID: | 781 |
| Nearest Unigene: | Hs.282151 |
| Nearest Refseq: | NM_000722 |
| Nearest Ensembl: | ENSG00000153956 |
| Gene Name: | |
| Gene Alias: | CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 |
| Gene Type: | protein-coding |
| CpG%: | 0.044118 |
| GC%: | 0.623188 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |