TSS: Rfhg 9858.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB384482:3 BC148348:3 BC042963:34 ENST00000370185.9:46 NM_001166252.2:46 NM_014839.5:46 AK291369:46 AK297417:49 AF357013:73 AK056665:-100 AY304518:-100 AK300361:102 AB007924:-148 ENST00000457765.6:-152 AF541281:-152
|annotation=5' UTR (NM_001166252, exon 1 of 6)
|annotation=5' UTR (NM_001166252, exon 1 of 6)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=phospholipid phosphatase related 4
|gene_description=phospholipid phosphatase related 4
|gene_id=
|gene_id=
|gene_name=PLPPR4
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000117600
|nearest_ensembl=ENSG00000117600
|nearest_promoter_id=NM_014839
|nearest_promoter_id=NM_014839
|nearest_refseq=NM_014839
|nearest_refseq=NM_014839
|nearest_transcripts=BC042963:34 ENST00000370185.9:46 NM_001166252.2:46 NM_014839.5:46 AK291369:46 AK297417:49 AF357013:73 AK056665:-100 AY304518:-100 AK300361:102 AB007924:-148 ENST00000457765.6:-152 AF541281:-152
|nearest_unigene=Hs.13245
|nearest_unigene=Hs.13245
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=99264444
|start=99264444

Latest revision as of 06:22, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_9858.1
Species:human
Chr:chr1
Start:99264444
End:99264446
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2202626,EH38E1371088)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB384482:3
BC148348:3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • BC042963:34
  • ENST00000370185.9:46
  • NM_001166252.2:46
  • NM_014839.5:46
  • AK291369:46
  • AK297417:49
  • AF357013:73
  • AK056665:-100
  • AY304518:-100
  • AK300361:102
  • AB007924:-148
  • ENST00000457765.6:-152
  • AF541281:-152
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:153
Nearest PromoterID:NM_014839
Entrez ID:9890
Nearest Unigene:Hs.13245
Nearest Refseq:NM_014839
Nearest Ensembl:ENSG00000117600
Gene Name:
Gene Alias:LPPR4|LPR4|PHP1|PRG-1|PRG1
Gene Type:protein-coding
CpG%:0.500000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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