TSS: Rfmm 108733.1: Difference between revisions

Latest revision as of 22:39, 21 December 2023

Basic information about the TSS

TSS ID:	rfmm_108733.1
TSS ID(Version3):	mm_97880.1
Species:	mouse
Chr:	chr11

Start:	83115219
End:	83115317
Strand:	+

Source datasets

FANTOM5|DRA000914

Protocol

CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D1246554,EM10E0512869)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857
Distance:	0
GeneID:	100043636
HGNC/MGI_ID:	MGI:2144254 MGI:3651774
UniProt_ID:

Gene_name:	AI662270
Gene_symbol:	AI662270 Gm11427
Gene_synonyms:
Gene_source:	MGI:2144254 MGI:3651774

TATA-Box annotation

Distance to TSS:	866
Nearest PromoterID:	NR_015519.1
Entrez ID:	AI662270
Nearest Unigene:	NR_015519
Nearest Refseq:
Nearest Ensembl:
Gene Name:	AI662270
Gene Alias:
Gene Description:
Gene Type:
CpG%:	0.020408
GC%:	0.464646
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:2144254 MGI:3651774
+|methods=CAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NR_015519.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914
 |species=mouse
 |start=83115219
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857
+|tss_cluster_detected=2
 |tss_id=rfmm_108733.1
 |tss_id_v3=mm_97880.1