TSS: Rfmm 123123.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF236280:64 MA471857:64 LF236279:376 MA471856:376 LF236281:-429 MA471858:-429 | |||
|annotation=intron (NM_145367.4, intron 8 of 9) | |annotation=intron (NM_145367.4, intron 8 of 9) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=XR_382215.5 | |nearest_promoter_id=XR_382215.5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=LF236279:376 MA471856:376 LF236281:-429 MA471858:-429 | |||
|nearest_unigene=XR_382215 | |nearest_unigene=XR_382215 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=38687557 | |start=38687557 | ||
Latest revision as of 23:04, 18 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS,CTCF-bound (EM10D1349030,EM10E0557154) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -19895 |
|---|---|
| Nearest PromoterID: | XR_382215.5 |
| Entrez ID: | Gm31834 |
| Nearest Unigene: | XR_382215 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |