TSS: Rfmm 124859.1: Difference between revisions
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3781781 | |hgnc_mgi_id=MGI:3781781 | ||
|methods=TSS_database{{!}}C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001162910.1 | |nearest_promoter_id=NM_001162910.1 | ||
Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD{{!}}PRJDB10397{{!}}GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=62530987 | |start=62530987 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000187656.7 | |transcript_name=ENSMUST00000187656.7 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfmm_124859.1 | |tss_id=rfmm_124859.1 | ||
|tss_id_v3=mm_161209.1 | |tss_id_v3=mm_161209.1 |
Latest revision as of 03:03, 22 December 2023
Basic information about the TSS
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Source datasets | EPD|PRJDB10397|GSE117655|DRA000914 | |||||||||||||||
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Protocol | TSS_database|C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||||
TSS cluster detected* | 4 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS (EM10D2442851,EM10E1008750) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -7 |
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Nearest PromoterID: | NM_001162910.1 |
Entrez ID: | Gm3604 |
Nearest Unigene: | XM_011244440 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Gm3604 |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.058824 |
GC%: | 0.611111 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.