TSS: Rfmm 129887.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF240567:19 MA476144:19 LF240568:129 MA476145:129 ENSMUST00000190252.7:191 NM_001379487.1:191 NM_001379488.1:191 NM_001379489.1:191 NM_001347528.1:191 NM_001347527.1:191 NM_001347526.1:191 NM_001347525.1:191 NM_001347524.1:191 NM_001379491.1:191 NM_001347523.1:191 NM_001379492.1:191 NM_001379486.1:191 NM_001379494.1:191 NM_001379490.1:191 NM_001347521.1:191 NM_001293635.1:191 NM_001347520.1:191 NM_001347519.1:191 NM_001379493.1:191 NM_001379495.1:191 NM_001293636.1:191 AK040200:191 ENSMUST00000186466.3:196 LF240569:227 MA476146:227 BC066871:237 ENSMUST00000189986.7:274 BC075697:274 | |||
|annotation=promoter-TSS (NM_001293635.1) | |annotation=promoter-TSS (NM_001293635.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=XM_036158499.1 | |nearest_promoter_id=XM_036158499.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=LF240568:129 MA476145:129 ENSMUST00000190252.7:191 NM_001379487.1:191 NM_001379488.1:191 NM_001379489.1:191 NM_001347528.1:191 NM_001347527.1:191 NM_001347526.1:191 NM_001347525.1:191 NM_001347524.1:191 NM_001379491.1:191 NM_001347523.1:191 NM_001379492.1:191 NM_001379486.1:191 NM_001379494.1:191 NM_001379490.1:191 NM_001347521.1:191 NM_001293635.1:191 NM_001347520.1:191 NM_001347519.1:191 NM_001379493.1:191 NM_001379495.1:191 NM_001293636.1:191 AK040200:191 ENSMUST00000186466.3:196 LF240569:227 MA476146:227 BC066871:237 ENSMUST00000189986.7:274 BC075697:274 | |||
|nearest_unigene=XM_036158499 | |nearest_unigene=XM_036158499 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=47886560 | |start=47886560 | ||
Latest revision as of 00:54, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2468936,EM10E1018610) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | XM_036158499.1 |
| Entrez ID: | Ktn1 |
| Nearest Unigene: | XM_036158499 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.058824 |
| GC%: | 0.611111 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "LF240568:129 MA476145:129 ENSMUST00000190252.7:191 NM_001379487.1:191 NM_001379488.1:191 NM_001379489.1:191 NM_001347528.1:191 NM_001347527.1:191 NM_001347526.1:191 NM_001347525.1:191 NM_001347524.1:191 NM_001379491.1:191 NM_001347523.1:191 NM_001379492.1:191 NM_001379486.1:191 NM_001379494.1:191 NM_001379490.1:191 NM_001347521.1:191 NM_001293635.1:191 NM_001347520.1:191 NM_001347519.1:191 NM_001379493.1:191 NM_001379495.1:191 NM_001293636.1:191 AK040200:191 ENSMUST00000186466.3:196 LF240569:227 MA476146:227 BC066871:237 ENSMUST00000189986.7:274 BC075697:274" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.