TSS: Hg 101183.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance= | |distance=NA | ||
|distance_to_tss= | |distance_to_tss=334934 | ||
|end=85040838 | |end=85040838 | ||
|end_of_center_position=85040835 | |||
|entrez_id=4915 | |entrez_id=4915 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
|gene_alias=GP145-TrkB | |gene_alias=EIEE58{{!}}GP145-TrkB{{!}}OBHD{{!}}TRKB{{!}}trk-B | ||
|gene_description=neurotrophic receptor tyrosine kinase 2 | |gene_description=neurotrophic receptor tyrosine kinase 2 | ||
|gene_name=NTRK2 | |gene_name=NTRK2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000148053 | |nearest_ensembl=ENSG00000148053 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001369552 | ||
|nearest_refseq=NM_006180 | |nearest_refseq=NM_006180 | ||
|nearest_unigene=Hs.494312 | |nearest_unigene=Hs.494312 | ||
| Line 19: | Line 20: | ||
|species=human | |species=human | ||
|start=85040831 | |start=85040831 | ||
|start_of_center_position=85040834 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|trk-B= | |trk-B= | ||
Latest revision as of 16:34, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 334934 |
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| Nearest PromoterID: | NM_001369552 |
| Entrez ID: | 4915 |
| Nearest Unigene: | Hs.494312 |
| Nearest Refseq: | NM_006180 |
| Nearest Ensembl: | ENSG00000148053 |
| Gene Name: | NTRK2 |
| Gene Alias: | EIEE58|GP145-TrkB|OBHD|TRKB|trk-B |
| Gene Description: | neurotrophic receptor tyrosine kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAC,+,0.00) |