TSS: Hg 101185.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|NNA1= | |NNA1= | ||
|all_trans=ENST00000648131.1:0 ENST00000661197.1:-11 ENST00000669133.1:19 ENST00000662737.1:-262 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=0 | ||
|distance_to_tss=298074 | |distance_to_tss=298074 | ||
|end=85443968 | |end=85443968 | ||
|end_of_center_position=85443956 | |||
|entrez_id=23287 | |entrez_id=23287 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=CCP1 | |gene_alias=CCP1{{!}}CONDCA{{!}}NNA1 | ||
|gene_description=ATP/GTP binding protein 1 | |gene_description=ATP/GTP binding protein 1 | ||
|gene_name=AGTPBP1 | |gene_name=AGTPBP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000135049 | |nearest_ensembl=ENSG00000135049 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001286717 | ||
|nearest_refseq=NM_015239 | |nearest_refseq=NM_015239 | ||
|nearest_unigene=Hs.719980 | |nearest_unigene=Hs.719980 | ||
|num_trans= | |num_trans=4 | ||
|species=human | |species=human | ||
|start=85443942 | |start=85443942 | ||
|start_of_center_position=85443955 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-40(CCTTTTATATGT,+,0.00) | ||
|transcript_name= | |transcript_name=ENST00000648131.1 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101185.1 | |tss_id=hg_101185.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:34, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 298074 |
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| Nearest PromoterID: | NM_001286717 |
| Entrez ID: | 23287 |
| Nearest Unigene: | Hs.719980 |
| Nearest Refseq: | NM_015239 |
| Nearest Ensembl: | ENSG00000135049 |
| Gene Name: | AGTPBP1 |
| Gene Alias: | CCP1|CONDCA|NNA1 |
| Gene Description: | ATP/GTP binding protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -40(CCTTTTATATGT,+,0.00) |