TSS: Hg 101234.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=NA | ||
|distance_to_tss=128692 | |distance_to_tss=128692 | ||
|end=87277341 | |end=87277341 | ||
|end_of_center_position=87277336 | |||
|entrez_id=401535 | |entrez_id=401535 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 10: | Line 11: | ||
|gene_description=chromosome 9 open reading frame 170 | |gene_description=chromosome 9 open reading frame 170 | ||
|gene_name=C9orf170 | |gene_name=C9orf170 | ||
|gene_type= | |gene_type=ncRNA | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_161226 | ||
|nearest_refseq= | |nearest_refseq=NR_161226 | ||
|nearest_unigene=Hs.657740 | |nearest_unigene=Hs.657740 | ||
|num_trans=0 | |num_trans=0 | ||
|species=human | |species=human | ||
|start=87277330 | |start=87277330 | ||
|start_of_center_position=87277335 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-93(CCTTAAATGAGC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:35, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 128692 |
|---|---|
| Nearest PromoterID: | NR_161226 |
| Entrez ID: | 401535 |
| Nearest Unigene: | Hs.657740 |
| Nearest Refseq: | NR_161226 |
| Nearest Ensembl: | |
| Gene Name: | C9orf170 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 170 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CCTTAAATGAGC,+,0.00) |