TSS: Rfmm 169440.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001164275.2:10 ENSMUST00000137011.2:-31 ENSMUST00000177904.8:33 ENSMUST00000126994.8:33 BC032926:33 ENSMUST00000126209.8:-34 AK008151:-34 ENSMUST00000132852.8:-69 ENSMUST00000114025.8:-70 ENSMUST00000148345.8:-70 AK135895:-70 AK083396:-70 ENSMUST00000134602.8:-73 ENSMUST00000114024.9:-75 ENSMUST00000156427.2:-75 AK161802:-75 NM_001289683.1:-76 NM_027322.2:-76 | |||
|annotation=promoter-TSS (NM_001164275.2) | |annotation=promoter-TSS (NM_001164275.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001164275.2 | |nearest_promoter_id=NM_001164275.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000137011.2:-31 ENSMUST00000177904.8:33 ENSMUST00000126994.8:33 BC032926:33 ENSMUST00000126209.8:-34 AK008151:-34 ENSMUST00000132852.8:-69 ENSMUST00000114025.8:-70 ENSMUST00000148345.8:-70 AK135895:-70 AK083396:-70 ENSMUST00000134602.8:-73 ENSMUST00000114024.9:-75 ENSMUST00000156427.2:-75 AK161802:-75 NM_001289683.1:-76 NM_027322.2:-76 | |||
|nearest_unigene=XM_011247631 | |nearest_unigene=XM_011247631 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=77627421 | |start=77627421 | ||
Latest revision as of 11:48, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2984687,EM10E1232567) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_001164275.2 |
| Entrez ID: | Prrg1 |
| Nearest Unigene: | XM_011247631 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.166667 |
| GC%: | 0.857143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000137011.2:-31 ENSMUST00000177904.8:33 ENSMUST00000126994.8:33 BC032926:33 ENSMUST00000126209.8:-34 AK008151:-34 ENSMUST00000132852.8:-69 ENSMUST00000114025.8:-70 ENSMUST00000148345.8:-70 AK135895:-70 AK083396:-70 ENSMUST00000134602.8:-73 ENSMUST00000114024.9:-75 ENSMUST00000156427.2:-75 AK161802:-75 NM_001289683.1:-76 NM_027322.2:-76" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.