TSS: Rfmm 17280.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001355416.1:0 NM_001355418.1:0 NM_001355417.1:0 NM_001355419.1:0 NM_001355421.1:0 NM_001355420.1:0 NM_145528.3:0 AK154470:9 AK171206:9 ENSMUST00000076803.12:10 BC016669:10 AK171440:18 AK149672:39 BC033419:43 AK163962:43 BC023712:44 BC023673:44 AK162732:44 AK085328:49 ENSMUST00000028678.9:67 | |||
|annotation=promoter-TSS (NM_001355416.1) | |annotation=promoter-TSS (NM_001355416.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_145528.3 | |nearest_promoter_id=NM_145528.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AK154470:9 AK171206:9 ENSMUST00000076803.12:10 BC016669:10 AK171440:18 AK149672:39 BC033419:43 AK163962:43 BC023712:44 BC023673:44 AK162732:44 AK085328:49 ENSMUST00000028678.9:67 | |||
|nearest_unigene=NM_001355421 | |nearest_unigene=NM_001355421 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=91540931 | |start=91540931 | ||
Latest revision as of 12:35, 19 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2648801,EM10E1092720) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_145528.3 |
| Entrez ID: | Atg13 |
| Nearest Unigene: | NM_001355421 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.538462 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |