TSS: Hg 102176.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=6203 |entrez_id=9966 |gc_percent=0.422886 |gene_alias=TL1|TL1A|TNLG1B|VEGI|VEGI192A |gene_description=tumor necrosis factor sup...") |
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{{TSSDetail | {{TSSDetail | ||
|TL1A= | |||
|TNLG1B= | |||
|VEGI= | |||
|VEGI192A= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=NA | |||
|distance_to_tss=6203 | |distance_to_tss=6203 | ||
|end=114786332 | |||
|end_of_center_position=114786327 | |||
|entrez_id=9966 | |entrez_id=9966 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=TL1 | |gene_alias=TL1{{!}}TL1A{{!}}TNLG1B{{!}}VEGI{{!}}VEGI192A | ||
|gene_description= | |gene_description=TNF superfamily member 15 | ||
|gene_name=TNFSF15 | |gene_name=TNFSF15 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
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|nearest_refseq=NM_005118 | |nearest_refseq=NM_005118 | ||
|nearest_unigene=Hs.23349 | |nearest_unigene=Hs.23349 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=114786321 | |||
|start_of_center_position=114786326 | |||
|strand=- | |||
|tata_box=34(TACCTTAAAAAC,-,0.00),36(CCTTAAAAACAC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102176.1 | |tss_id=hg_102176.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:57, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 6203 |
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Nearest PromoterID: | NM_001204344 |
Entrez ID: | 9966 |
Nearest Unigene: | Hs.23349 |
Nearest Refseq: | NM_005118 |
Nearest Ensembl: | ENSG00000181634 |
Gene Name: | TNFSF15 |
Gene Alias: | TL1|TL1A|TNLG1B|VEGI|VEGI192A |
Gene Description: | TNF superfamily member 15 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.422886 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 34(TACCTTAAAAAC,-,0.00),36(CCTTAAAAACAC,+,0.00) |