TSS: Mm 115876.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK139521:0 NM_178211:-10 uc007prf.2:-10 BC117010:-10 BC117012:-10 BC096767:16 ENSMUST00000102983.1:31 BC119612:31 |chr=chr13 |cpg_percent=0.07 |distance...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:2448439 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=14 | |distance_to_tss=14 | ||
|end=21750543 | |end=21750543 | ||
|end_of_center_position=21750540 | |||
|entrez_id=319160 | |entrez_id=319160 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description= | |gene_description=histone cluster 1, H4k | ||
|gene_id=319160 | |gene_id=319160 | ||
|gene_name= | |gene_name=H4 clustered histone 12 | ||
|gene_source=MGI:2448439 | |gene_source=MGI:2448439 | ||
|gene_symbol= | |gene_symbol=H4c12 | ||
|gene_synonyms= | |gene_synonyms=Hist1h4k | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2448439 | |hgnc_mgi_id=MGI:2448439 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_178211 | |nearest_refseq=NM_178211 | ||
|nearest_unigene=Mm.255646 | |nearest_unigene=Mm.255646 | ||
|num_trans= | |num_trans=319160 | ||
|species=mouse | |species=mouse | ||
|start=21750535 | |start=21750535 | ||
|start_of_center_position=21750539 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-33(CAGTATAAAAAG,-,0.00) | ||
|transcript_name=AK139521 | |transcript_name=AK139521 | ||
|tss_classification= | |tss_classification=yes | ||
|tss_id=mm_115876.1 | |tss_id=mm_115876.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 16:17, 26 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14 |
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| Nearest PromoterID: | NM_178211 |
| Entrez ID: | 319160 |
| Nearest Unigene: | Mm.255646 |
| Nearest Refseq: | NM_178211 |
| Nearest Ensembl: | ENSMUSG00000064288 |
| Gene Name: | H4 clustered histone 12 |
| Gene Alias: | - |
| Gene Description: | histone cluster 1, H4k |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CAGTATAAAAAG,-,0.00) |
TSS expression
Expression data not found.