TSS: Rfmm 41374.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000049821.4:0 AK049536:0 ENSMUST00000238583.2:27 | |||
|annotation=promoter-TSS (XR_004942049.1) | |annotation=promoter-TSS (XR_004942049.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=385211 | |gene_id=385211 | ||
|gene_name= | |gene_name=predicted gene, 21411; zinc finger protein 986 | ||
|gene_source=MGI:3649925 MGI:5434766 | |gene_source=MGI:3649925 MGI:5434766 | ||
|gene_symbol=Gm21411 Zfp986 | |gene_symbol=Gm21411 Zfp986 | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3649925 MGI:5434766 | |hgnc_mgi_id=MGI:3649925 MGI:5434766 | ||
|methods=CAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=XR_004942049.1 | |nearest_promoter_id=XR_004942049.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000238583.2:27 | |||
|nearest_unigene=XR_004942049 | |nearest_unigene=XR_004942049 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJDB10397 | |||
|species=mouse | |species=mouse | ||
|start=146994011 | |start=146994011 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000049821.4 AK049536 | |transcript_name=ENSMUST00000049821.4 AK049536 | ||
|tss_cluster_detected=3 | |||
|tss_id=rfmm_41374.1 | |tss_id=rfmm_41374.1 | ||
|tss_id_v3=mm_166106.1 | |tss_id_v3=mm_166106.1 | ||
Latest revision as of 19:15, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|PRJDB10397 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|CAGE_and_CAGEscan|C1CAGE | |||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2761040,EM10E1138099) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | XR_004942049.1 |
| Entrez ID: | Gm21411 |
| Nearest Unigene: | XR_004942049 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | predicted gene, 21411; zinc finger protein 986 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.042553 |
| GC%: | 0.479167 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.