TSS: Hg 101806.1: Difference between revisions
From referenceTSS
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|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
|all_trans=LF354701:-160 MA590278:-160 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance= | |distance=-160 | ||
|distance_to_tss= | |distance_to_tss=1703 | ||
|end=104926463 | |end=104926463 | ||
|end_of_center_position=104926452 | |||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=ABC-1 | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD | ||
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_name=ABCA1 | |gene_name=ABCA1 | ||
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|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=104926440 | |start=104926440 | ||
|start_of_center_position=104926451 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF354701 MA590278 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101806.1 | |tss_id=hg_101806.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1703 |
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| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |