TSS: Hg 101817.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=NA | ||
|distance_to_tss=- | |distance_to_tss=-64978 | ||
|end=104993135 | |end=104993135 | ||
|end_of_center_position=104993134 | |||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
|gene_alias=ABC-1 | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD | ||
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_name=ABCA1 | |gene_name=ABCA1 | ||
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|species=human | |species=human | ||
|start=104993131 | |start=104993131 | ||
|start_of_center_position=104993133 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-36(TGCCTTATAAGA,-,0.00),-34(CCTTATAAGAAG,+,0.00),-7(GTCTCTAAGAGC,-,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:49, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -64978 |
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| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(TGCCTTATAAGA,-,0.00),-34(CCTTATAAGAAG,+,0.00),-7(GTCTCTAAGAGC,-,0.00) |