TSS: Hg 101895.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=NA | ||
|distance_to_tss=-3674 | |distance_to_tss=-3674 | ||
|end=109421465 | |end=109421465 | ||
|end_of_center_position=109421458 | |||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=PTP-H1 | |gene_alias=PTP-H1{{!}}PTPH1 | ||
|gene_description= | |gene_description=protein tyrosine phosphatase non-receptor type 3 | ||
|gene_name=PTPN3 | |gene_name=PTPN3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 19: | Line 20: | ||
|species=human | |species=human | ||
|start=109421449 | |start=109421449 | ||
|start_of_center_position=109421457 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:50, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -3674 |
|---|---|
| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00) |