TSS: Rfmm 69854.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000173287.8:-3 ENSMUST00000172490.2:-41 NM_001190374.1:-41 | |||
|annotation=promoter-TSS (NM_001190374.1) | |annotation=promoter-TSS (NM_001190374.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=269959 | |gene_id=269959 | ||
|gene_name= | |gene_name=ADAMTS-like 3 | ||
|gene_source=MGI:3028499 | |gene_source=MGI:3028499 | ||
|gene_symbol=Adamtsl3 | |gene_symbol=Adamtsl3 | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3028499 | |hgnc_mgi_id=MGI:3028499 | ||
|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001190374.1 | |nearest_promoter_id=NM_001190374.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000172490.2:-41 NM_001190374.1:-41 | |||
|nearest_unigene=XM_006507894 | |nearest_unigene=XM_006507894 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=81984943 | |start=81984943 | ||
Latest revision as of 03:07, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2875999,EM10E1187270) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 53 |
|---|---|
| Nearest PromoterID: | NM_001190374.1 |
| Entrez ID: | Adamtsl3 |
| Nearest Unigene: | XM_006507894 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | ADAMTS-like 3 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.166667 |
| GC%: | 0.800000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.