TSS: Rfmm 73781.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000094018.6:0 ENSMUST00000206551.2:0 ENSMUST00000206918.2:0 ENSMUST00000205630.2:0 ENSMUST00000205896.2:0 AK081292:0 NM_001080963.1:38 BC120497:38 BC144735:38 | |||
|annotation=promoter-TSS (NM_001080963.1) | |annotation=promoter-TSS (NM_001080963.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description= | |gene_description= | ||
|gene_id=381925 | |gene_id=381925 | ||
|gene_name= | |gene_name=phospholipid phosphatase 4 | ||
|gene_source=MGI:2685936 | |gene_source=MGI:2685936 | ||
|gene_symbol=Plpp4 | |gene_symbol=Plpp4 | ||
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2685936 | |hgnc_mgi_id=MGI:2685936 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001080963.1 | |nearest_promoter_id=NM_001080963.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=NM_001080963.1:38 BC120497:38 BC144735:38 | |||
|nearest_unigene=XM_036153203 | |nearest_unigene=XM_036153203 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=128858752 | |start=128858752 |
Latest revision as of 04:14, 20 March 2025
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS (EM10D2890578,EM10E1193506) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -52 |
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Nearest PromoterID: | NM_001080963.1 |
Entrez ID: | Plpp4 |
Nearest Unigene: | XM_036153203 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | phospholipid phosphatase 4 |
Gene Alias: | |
Gene Type: | |
CpG%: | 0.142857 |
GC%: | 0.793103 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.