TSS: Rfmm 73781.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000094018.6:0 ENSMUST00000206551.2:0 ENSMUST00000206918.2:0 ENSMUST00000205630.2:0 ENSMUST00000205896.2:0 AK081292:0 NM_001080963.1:38 BC120497:38 BC144735:38
|annotation=promoter-TSS (NM_001080963.1)
|annotation=promoter-TSS (NM_001080963.1)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=
|gene_description=
|gene_id=381925
|gene_id=381925
|gene_name=Plpp4
|gene_name=phospholipid phosphatase 4
|gene_source=MGI:2685936
|gene_source=MGI:2685936
|gene_symbol=Plpp4
|gene_symbol=Plpp4
Line 21: Line 22:
|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:2685936
|hgnc_mgi_id=MGI:2685936
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_001080963.1
|nearest_promoter_id=NM_001080963.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=NM_001080963.1:38 BC120497:38 BC144735:38
|nearest_unigene=XM_036153203
|nearest_unigene=XM_036153203
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=mouse
|species=mouse
|start=128858752
|start=128858752

Latest revision as of 04:14, 20 March 2025

Basic information about the TSS


TSS ID:rfmm_73781.1
Species:mouse
Chr:chr7
Start:128858752
End:128858780
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2890578,EM10E1193506)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000094018.6:0
ENSMUST00000206551.2:0
ENSMUST00000206918.2:0
ENSMUST00000205630.2:0
ENSMUST00000205896.2:0
AK081292:0
GeneID:381925
HGNC/MGI_ID:MGI:2685936
UniProt_ID:A0A0U1RP67 A0A0U1RPE2 Q0VBU9
Nearer transcript ids and distances:
  • NM_001080963.1:38
  • BC120497:38
  • BC144735:38
view more...
Gene_name:phospholipid phosphatase 4
Gene_symbol:Plpp4
Gene_synonyms:C030048B12Rik LOC381925 Ppapdc1a
Gene_source:MGI:2685936



TATA-Box annotation


Distance to TSS:-52
Nearest PromoterID:NM_001080963.1
Entrez ID:Plpp4
Nearest Unigene:XM_036153203
Nearest Refseq:
Nearest Ensembl:
Gene Name:phospholipid phosphatase 4
Gene Alias:
Gene Type:
CpG%:0.142857
GC%:0.793103
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.