TSS: Rfmm 82160.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AK015021:-7 LF197258:-16 MA432835:-16 LF303050:74 MA538627:74 | |||
|annotation=exon (NR_126329.1, exon 10 of 10) | |annotation=exon (NR_126329.1, exon 10 of 10) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=105243282 | |gene_id=105243282 | ||
|gene_name= | |gene_name=RIKEN cDNA 4922502B01 gene | ||
|gene_source=MGI:1918204 | |gene_source=MGI:1918204 | ||
|gene_symbol=4922502B01Rik | |gene_symbol=4922502B01Rik | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1918204 | |hgnc_mgi_id=MGI:1918204 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_151498.1 | |nearest_promoter_id=NR_151498.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=LF197258:-16 MA432835:-16 LF303050:74 MA538627:74 | |||
|nearest_unigene=NR_151498 | |nearest_unigene=NR_151498 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=109978331 | |start=109978331 | ||
Latest revision as of 06:32, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2154748,EM10E0888922) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1961 |
|---|---|
| Nearest PromoterID: | NR_151498.1 |
| Entrez ID: | 4922502B01Rik |
| Nearest Unigene: | NR_151498 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | RIKEN cDNA 4922502B01 gene |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.071429 |
| GC%: | 0.733333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.