TSS: Rfmm 827.1: Difference between revisions

Latest revision as of 06:41, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_827.1
Species:	mouse
Chr:	chr1

Start:	34050339
End:	34050349
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS,CTCF-bound (EM10D2266929,EM10E0933599)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_133833.4:327 NM_134448.4:327
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	319
Nearest PromoterID:	XM_006495688.4
Entrez ID:	Dst
Nearest Unigene:	XM_006495691
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_133833.4:327 NM_134448.4:327
 |annotation=promoter-TSS (NM_133833.4)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=
-|gene_name=Dst
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=XM_006495688.4
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_006495691
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=mouse
 |start=34050339