TSS: Rfmm 84614.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000066387.6:0 NM_001030290.2:0 BC148618:0 BC153184:0 | |||
|annotation=promoter-TSS (NM_001030290.2) | |annotation=promoter-TSS (NM_001030290.2) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=235033 | |gene_id=235033 | ||
|gene_name= | |gene_name=retinol dehydrogenase 8 | ||
|gene_source=MGI:2685028 | |gene_source=MGI:2685028 | ||
|gene_symbol=Rdh8 | |gene_symbol=Rdh8 | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2685028 | |hgnc_mgi_id=MGI:2685028 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001030290.2 | |nearest_promoter_id=NM_001030290.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=NM_001030290 | |nearest_unigene=NM_001030290 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start=20729787 | |start=20729787 | ||
Latest revision as of 07:12, 20 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001030290.2 |
| Entrez ID: | Rdh8 |
| Nearest Unigene: | NM_001030290 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | retinol dehydrogenase 8 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.