TSS: Rfmm 89261.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000081746.7:0 NM_153584.2:0 BC031353:0 | |||
|annotation=promoter-TSS (NM_153584.2) | |annotation=promoter-TSS (NM_153584.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=235493 | |gene_id=235493 | ||
|gene_name= | |gene_name=atos homolog A | ||
|gene_source=MGI:2387648 | |gene_source=MGI:2387648 | ||
|gene_symbol=Atosa | |gene_symbol=Atosa | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2387648 | |hgnc_mgi_id=MGI:2387648 | ||
|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_153584.2 | |nearest_promoter_id=NM_153584.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=NR_153342 | |nearest_unigene=NR_153342 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=74883379 | |start=74883379 | ||
Latest revision as of 08:30, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2960494,EM10E1223226) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_153584.2 |
| Entrez ID: | Fam214a |
| Nearest Unigene: | NR_153342 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | atos homolog A |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.075000 |
| GC%: | 0.641975 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.