TSS: Rfmm 96258.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000045866.9:0 NM_019553.2:0 BC060220:0 BC043655:0 BC059237:0 AF159131:0 AK160095:0 AK010281:0 AK145578:0 AK012125:0 | |||
|annotation=promoter-TSS (NM_019553.2) | |annotation=promoter-TSS (NM_019553.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=56200 | |gene_id=56200 | ||
|gene_name= | |gene_name=DExD box helicase 21 | ||
|gene_source=MGI:1860494 | |gene_source=MGI:1860494 | ||
|gene_symbol=Ddx21 | |gene_symbol=Ddx21 | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1860494 | |hgnc_mgi_id=MGI:1860494 | ||
|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan{{!}}C1CAGE{{!}}deepCAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=XM_030245181.1 | |nearest_promoter_id=XM_030245181.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=NM_019553 | |nearest_unigene=NM_019553 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJDB10397{{!}}GSE117655 | |||
|species=mouse | |species=mouse | ||
|start=62437951 | |start=62437951 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000045866.9 BC060220 BC043655 BC059237 AF159131 AK160095 AK010281 AK145578 AK012125 | |transcript_name=ENSMUST00000045866.9 BC060220 BC043655 BC059237 AF159131 AK160095 AK010281 AK145578 AK012125 | ||
|tss_cluster_detected=5 | |||
|tss_id=rfmm_96258.1 | |tss_id=rfmm_96258.1 | ||
|tss_id_v3=mm_168189.1;mm_168190.1;mm_92072.1 | |tss_id_v3=mm_168189.1;mm_168190.1;mm_92072.1 | ||
Latest revision as of 10:27, 20 March 2025
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|EPD|DRA000914|PRJDB10397|GSE117655 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE | |||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2325866,EM10E0957751) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | XM_030245181.1 |
| Entrez ID: | Ddx21 |
| Nearest Unigene: | NM_019553 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | DExD box helicase 21 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.078788 |
| GC%: | 0.626506 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.