TSS: Rfmm 99515.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000056085.6:-42 NM_027945.3:-42 AK005713:-42 AK161295:142 BC050750:150 | |||
|annotation=promoter-TSS (NM_027945.3) | |annotation=promoter-TSS (NM_027945.3) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=71832 | |gene_id=71832 | ||
|gene_name= | |gene_name=citrate synthase like; small muscle protein, X-linked | ||
|gene_source=MGI:1913356 MGI:1919082 | |gene_source=MGI:1913356 MGI:1919082 | ||
|gene_symbol=Csl Smpx | |gene_symbol=Csl Smpx | ||
| Line 21: | Line 22: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1913356 MGI:1919082 | |hgnc_mgi_id=MGI:1913356 MGI:1919082 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_027945.3 | |nearest_promoter_id=NM_027945.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AK161295:142 BC050750:150 | |||
|nearest_unigene=NM_027945 | |nearest_unigene=NM_027945 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start=99595468 | |start=99595468 | ||
Latest revision as of 11:22, 20 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_027945.3 |
| Entrez ID: | Csl |
| Nearest Unigene: | NM_027945 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | citrate synthase like; small muscle protein, X-linked |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.100000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.