TSS: Rfhg 100153.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000418546.1:32 ENST00000447307.5:53 ENST00000432045.6:-79 NR_110473.1:-79 NR_034120.1:-79 NR_110472.1:-79 AK095549:-79 LP896493:-79 GU321462:98 MG322760:122 | |||
|annotation=promoter-TSS (NR_034120) | |annotation=promoter-TSS (NR_034120) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=long intergenic non-protein coding RNA, p53 induced transcript | |gene_description=long intergenic non-protein coding RNA, p53 induced transcript | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_034120 | |nearest_promoter_id=NR_034120 | ||
|nearest_refseq=NM_001085379 | |nearest_refseq=NM_001085379 | ||
|nearest_transcripts=ENST00000447307.5:53 ENST00000432045.6:-79 NR_110473.1:-79 NR_034120.1:-79 NR_110472.1:-79 AK095549:-79 LP896493:-79 GU321462:98 MG322760:122 | |||
|nearest_unigene=Hs.150556 | |nearest_unigene=Hs.150556 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 11:09, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4031168,EH38E2590693) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 80 |
|---|---|
| Nearest PromoterID: | NR_034120 |
| Entrez ID: | 378805 |
| Nearest Unigene: | Hs.150556 |
| Nearest Refseq: | NM_001085379 |
| Nearest Ensembl: | ENSG00000231721 |
| Gene Name: | |
| Gene Alias: | LincRNA-Pint|MKLN1-AS1|PINT |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |