TSS: Rfhg 100654.1: Difference between revisions

Latest revision as of 11:19, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_100654.1
Species:	human
Chr:	chr7

Start:	137268578
End:	137268581
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4036650,EH38E2594275)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001321386.2:-274
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	276
Nearest PromoterID:	NM_001321386
Entrez ID:	5764
Nearest Unigene:	Hs.371249
Nearest Refseq:	NM_002825
Nearest Ensembl:	ENSG00000105894
Gene Name:
Gene Alias:	HARP\|HB-GAM\|HBBM\|HBGF-8\|HBGF8\|HBNF\|HBNF-1\|NEGF1\|OSF-1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001321386.2:-274
 |annotation=5' UTR (NM_001321386, exon 1 of 5)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=pleiotrophin
 |gene_id=
-|gene_name=PTN
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001321386
 |nearest_refseq=NM_002825
+|nearest_transcripts=
 |nearest_unigene=Hs.371249
 |peak_score=1