TSS: Rfhg 100776.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000442682.7:0 ENST00000458494.1:0 ENST00000413208.1:0 NM_001085429.2:0 AK055841:0 BC058028:0 ENST00000472775.1:17 ENST00000397602.7:-37 BC131697:-37 KJ903903:-39 | |||
|annotation=promoter-TSS (NM_001085429) | |annotation=promoter-TSS (NM_001085429) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=transmembrane protein 213 | |gene_description=transmembrane protein 213 | ||
|gene_id=155006 | |gene_id=155006 | ||
|gene_name= | |gene_name=transmembrane protein 213 | ||
|gene_source=HGNC:27220 | |gene_source=HGNC:27220 | ||
|gene_symbol=TMEM213 | |gene_symbol=TMEM213 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001085429 | |nearest_promoter_id=NM_001085429 | ||
|nearest_refseq=NM_001085429 | |nearest_refseq=NM_001085429 | ||
|nearest_transcripts=ENST00000472775.1:17 ENST00000397602.7:-37 BC131697:-37 KJ903903:-39 | |||
|nearest_unigene=Hs.567729 | |nearest_unigene=Hs.567729 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 11:21, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4037914,EH38E2595197) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001085429 |
| Entrez ID: | 155006 |
| Nearest Unigene: | Hs.567729 |
| Nearest Refseq: | NM_001085429 |
| Nearest Ensembl: | ENSG00000214128 |
| Gene Name: | transmembrane protein 213 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.583333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.