TSS: Rfhg 10121.1: Difference between revisions

Latest revision as of 11:28, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_10121.1
Species:	human
Chr:	chr1

Start:	103749676
End:	103749676
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000683532.1:-22
GeneID:	278
HGNC/MGI_ID:	HGNC:476
UniProt_ID:
Nearer transcript ids and distances:	ENST00000622339.5:222 NM_001008219.3:222 view more...

Gene_name:	amylase alpha 1C
Gene_symbol:	AMY1C
Gene_synonyms:
Gene_source:	HGNC:476

TATA-Box annotation

Distance to TSS:	19
Nearest PromoterID:	NM_001008221
Entrez ID:	276
Nearest Unigene:	Hs.655232
Nearest Refseq:	NM_004038
Nearest Ensembl:	ENSG00000237763
Gene Name:	amylase alpha 1C
Gene Alias:	AMY1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000683532.1:-22 NM_001346780.1:-22 ENST00000622339.5:222 NM_001008219.3:222
 |annotation=promoter-TSS (NM_004038)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=amylase alpha 1A (salivary)
 |gene_id=278
-|gene_name=AMY1A
+|gene_name=amylase alpha 1C
 |gene_source=HGNC:476
 |gene_symbol=AMY1C
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001008221
 |nearest_refseq=NM_004038
+|nearest_transcripts=ENST00000622339.5:222 NM_001008219.3:222
 |nearest_unigene=Hs.655232
 |peak_score=1