TSS: Rfhg 101594.1: Difference between revisions

Latest revision as of 15:56, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_101594.1
Species:	human
Chr:	chr7

Start:	143382366
End:	143382394
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4041911,EH38E2598135)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC021069:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	U15158:-89 NR_106952.1:292 LQ724423:292 ENST00000477373.1:-338 AK299005:-356 LQ724611:386 AK130138:439 ENST00000436448.1:456 ENST00000392910.6:-459 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-76
Nearest PromoterID:	NM_001371250
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:	0.071429
GC%:	0.689655
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC021069:0 U15158:-89 NR_106952.1:292 LQ724423:292 ENST00000477373.1:-338 AK299005:-356 LQ724611:386 AK130138:439 ENST00000436448.1:456 ENST00000392910.6:-459
 |annotation=promoter-TSS (NR_106952)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001371250
 |nearest_refseq=
+|nearest_transcripts=U15158:-89 NR_106952.1:292 LQ724423:292 ENST00000477373.1:-338 AK299005:-356 LQ724611:386 AK130138:439 ENST00000436448.1:456 ENST00000392910.6:-459
 |nearest_unigene=
 |peak_score=1