TSS: Rfhg 10169.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=intron (NM_001113226, intron 1 of 6)
|annotation=intron (NM_001113226, intron 1 of 6)
|ccre_category=N
|ccre_category=N
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|gene_description=netrin G1
|gene_description=netrin G1
|gene_id=
|gene_id=
|gene_name=NTNG1
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_001113228
|nearest_promoter_id=NM_001113228
|nearest_refseq=NM_014917
|nearest_refseq=NM_014917
|nearest_transcripts=
|nearest_unigene=Hs.133046
|nearest_unigene=Hs.133046
|peak_score=1
|peak_score=1

Latest revision as of 11:36, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_10169.1
Species:human
Chr:chr1
Start:107280174
End:107280175
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:132105
    Nearest PromoterID:NM_001113228
    Entrez ID:22854
    Nearest Unigene:Hs.133046
    Nearest Refseq:NM_014917
    Nearest Ensembl:ENSG00000162631
    Gene Name:
    Gene Alias:Lmnt1
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:1.000000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):