TSS: Rfhg 101782.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF362131:20 MA597708:20 LF362132:-111 MA597709:-111 LF362135:-283 MA597712:-283 LF362136:-458 MA597713:-458 | |||
|annotation=non-coding (NR_163906, exon 9 of 9) | |annotation=non-coding (NR_163906, exon 9 of 9) | ||
|ccre_category=N | |ccre_category=N | ||
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|gene_description=gastric carcinoma proliferation enhancing transcript 1 | |gene_description=gastric carcinoma proliferation enhancing transcript 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_130107 | |nearest_promoter_id=NR_130107 | ||
|nearest_refseq=NR_130107 | |nearest_refseq=NR_130107 | ||
|nearest_transcripts=LF362132:-111 MA597709:-111 LF362135:-283 MA597712:-283 LF362136:-458 MA597713:-458 | |||
|nearest_unigene=Hs.621982 | |nearest_unigene=Hs.621982 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 11:38, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16209 |
|---|---|
| Nearest PromoterID: | NR_130107 |
| Entrez ID: | 102723099 |
| Nearest Unigene: | Hs.621982 |
| Nearest Refseq: | NR_130107 |
| Nearest Ensembl: | ENSG00000281189 |
| Gene Name: | |
| Gene Alias: | lncRNA-GHET1 |
| Gene Type: | ncRNA |
| CpG%: | 0.125000 |
| GC%: | 0.705882 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |