TSS: Hg 102246.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-354 |entrez_id=5069 |gc_percent=0.422886 |gene_alias=ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 |gene_description=pappalysin...") |
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{{TSSDetail | {{TSSDetail | ||
|DIPLA1= | |||
|IGFBP-4ase= | |||
|PAPA= | |||
|PAPP-A= | |||
|PAPPA1= | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance_to_tss=- | |distance=NA | ||
|distance_to_tss=-353 | |||
|end=116153440 | |||
|end_of_center_position=116153439 | |||
|entrez_id=5069 | |entrez_id=5069 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=ASBABP2 | |gene_alias=ASBABP2{{!}}DIPLA1{{!}}IGFBP-4ase{{!}}PAPA{{!}}PAPP-A{{!}}PAPPA1 | ||
|gene_description=pappalysin 1 | |gene_description=pappalysin 1 | ||
|gene_name=PAPPA | |gene_name=PAPPA | ||
| Line 12: | Line 21: | ||
|nearest_refseq=NM_002581 | |nearest_refseq=NM_002581 | ||
|nearest_unigene=Hs.643599 | |nearest_unigene=Hs.643599 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=116153436 | |||
|start_of_center_position=116153438 | |||
|strand=- | |||
|tata_box=-7(TTTTTTAAGGAG,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102246.1 | |tss_id=hg_102246.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:59, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -353 |
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| Nearest PromoterID: | NM_002581 |
| Entrez ID: | 5069 |
| Nearest Unigene: | Hs.643599 |
| Nearest Refseq: | NM_002581 |
| Nearest Ensembl: | ENSG00000182752 |
| Gene Name: | PAPPA |
| Gene Alias: | ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 |
| Gene Description: | pappalysin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(TTTTTTAAGGAG,+,0.00) |