TSS: Rfhg 114674.1: Difference between revisions

Latest revision as of 15:39, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_114674.1
Species:	human
Chr:	chr9

Start:	35042226
End:	35042269
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4187500,EH38E2691548)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000312292.6:0 BC045643:0 AK097595:0 AK302123:0
GeneID:	138724
HGNC/MGI_ID:	HGNC:31418
UniProt_ID:	B4DXT9 Q5VYM1
Nearer transcript ids and distances:	ENST00000378745.3:-13 ENST00000416537.2:203 view more...

Gene_name:	chromosome 9 open reading frame 131
Gene_symbol:	C9orf131
Gene_synonyms:	MGC41945
Gene_source:	HGNC:31418

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_001040410
Entrez ID:	138724
Nearest Unigene:	Hs.148250
Nearest Refseq:	NM_203299
Nearest Ensembl:	ENSG00000174038
Gene Name:	chromosome 9 open reading frame 131
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.522727
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000312292.6:0 NM_001040410.3:0 NM_203299.4:0 NM_001287391.2:0 BC045643:0 AK097595:0 AK302123:0 ENST00000378745.3:-13 ENST00000416537.2:203
 |annotation=promoter-TSS (NM_203299)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=chromosome 9 open reading frame 131
 |gene_id=138724
-|gene_name=C9orf131
+|gene_name=chromosome 9 open reading frame 131
 |gene_source=HGNC:31418
 |gene_symbol=C9orf131
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001040410
 |nearest_refseq=NM_203299
+|nearest_transcripts=ENST00000378745.3:-13 ENST00000416537.2:203
 |nearest_unigene=Hs.148250
 |peak_score=1