TSS: Rfhg 115636.1: Difference between revisions

Latest revision as of 15:55, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_115636.1
TSS ID(Version3):	hg_100983.1
Species:	human
Chr:	chr9

Start:	72930882
End:	72931021
Strand:	-

Source datasets

FANTOM5|PRJDB5282|PRJNA4843412|DRA013844|PRJNA548673

Protocol

CAGE|C1CAGE|NETCAGE|ReCappable-seq

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4195712,EH38E2697093)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	22102
Nearest PromoterID:	NM_000689
Entrez ID:	216
Nearest Unigene:	Hs.76392
Nearest Refseq:	NM_000689
Nearest Ensembl:	ENSG00000165092
Gene Name:
Gene Alias:	ALDC\|ALDH-E1\|ALDH1\|ALDH11\|HEL-9\|HEL-S-53e\|HEL12\|PUMB1\|RALDH1
Gene Type:	protein-coding
CpG%:	0.050360
GC%:	0.507143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_000689, exon 3 of 13)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=aldehyde dehydrogenase 1 family member A1
 |gene_id=
-|gene_name=ALDH1A1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000689
 |nearest_refseq=NM_000689
+|nearest_transcripts=
 |nearest_unigene=Hs.76392
 |peak_score=1