TSS: Rfhg 116062.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF384925:-4 MA620502:-4 AK074535:11 ENST00000376395.9:256 NM_013438.5:256 NM_053067.3:256 AL136643:257 AK027556:262 BC039294:270 BC017289:270 AK027576:271 ENST00000257468.11:280 BC010066:281 AB035275:426
|annotation=promoter-TSS (NM_053067)
|annotation=promoter-TSS (NM_053067)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=uncharacterized LOC105376114
|gene_description=uncharacterized LOC105376114
|gene_id=
|gene_id=
|gene_name=LOC105376114
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NR_135840
|nearest_promoter_id=NR_135840
|nearest_refseq=NR_135839
|nearest_refseq=NR_135839
|nearest_transcripts=AK074535:11 ENST00000376395.9:256 NM_013438.5:256 NM_053067.3:256 AL136643:257 AK027556:262 BC039294:270 BC017289:270 AK027576:271 ENST00000257468.11:280 BC010066:281 AB035275:426
|nearest_unigene=Hs.9589
|nearest_unigene=Hs.9589
|peak_score=1
|peak_score=1

Latest revision as of 16:02, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_116062.1
Species:human
Chr:chr9
Start:83708214
End:83708249
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4203786,EH38E2702132)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF384925:-4
MA620502:-4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AK074535:11
  • ENST00000376395.9:256
  • NM_013438.5:256
  • NM_053067.3:256
  • AL136643:257
  • AK027556:262
  • BC039294:270
  • BC017289:270
  • AK027576:271
  • ENST00000257468.11:280
  • BC010066:281
  • AB035275:426
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-100
Nearest PromoterID:NR_135840
Entrez ID:105376114
Nearest Unigene:Hs.9589
Nearest Refseq:NR_135839
Nearest Ensembl:ENSG00000254473
Gene Name:
Gene Alias:-
Gene Type:ncRNA
CpG%:0.171429
GC%:0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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