TSS: Hg 102523.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|NPS1= | |NPS1= | ||
|all_trans=ENST00000451449.2 | |all_trans=ENST00000451449.2:95 ENST00000425370.1:96 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
Line 7: | Line 7: | ||
|distance_to_tss=-645 | |distance_to_tss=-645 | ||
|end=126613801 | |end=126613801 | ||
|end_of_center_position=126613798 | |||
|entrez_id=4010 | |entrez_id=4010 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=LMX1.2 | |gene_alias=LMX1.2{{!}}NPS1 | ||
|gene_description=LIM homeobox transcription factor 1 beta | |gene_description=LIM homeobox transcription factor 1 beta | ||
|gene_name=LMX1B | |gene_name=LMX1B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000136944 | |nearest_ensembl=ENSG00000136944 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001174146 | ||
|nearest_refseq=NM_002316 | |nearest_refseq=NM_002316 | ||
|nearest_unigene=Hs.129133 | |nearest_unigene=Hs.129133 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=126613794 | |start=126613794 | ||
|start_of_center_position=126613797 | |||
|strand=- | |strand=- | ||
|transcript_name=ENST00000451449.2 | |transcript_name=ENST00000451449.2 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102523.1 | |tss_id=hg_102523.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} |
Latest revision as of 17:05, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -645 |
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Nearest PromoterID: | NM_001174146 |
Entrez ID: | 4010 |
Nearest Unigene: | Hs.129133 |
Nearest Refseq: | NM_002316 |
Nearest Ensembl: | ENSG00000136944 |
Gene Name: | LMX1B |
Gene Alias: | LMX1.2|NPS1 |
Gene Description: | LIM homeobox transcription factor 1 beta |
Gene Type: | protein-coding |
CpG%: | 0.16 |
GC%: | 0.79602 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |