TSS: Rfhg 117658.1: Difference between revisions

Latest revision as of 16:33, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_117658.1
Species:	human
Chr:	chr9

Start:	104927462
End:	104927468
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4221315,EH38E2714047)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000435915.1:85
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK311445:162

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	690
Nearest PromoterID:	NM_005502
Entrez ID:	19
Nearest Unigene:	Hs.659274
Nearest Refseq:	NM_005502
Nearest Ensembl:	ENSG00000165029
Gene Name:
Gene Alias:	ABC-1\|ABC1\|CERP\|HDLDT1\|TGD
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000435915.1:85 AK311445:162
 |annotation=intron (NM_005502, intron 1 of 49)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=ATP binding cassette subfamily A member 1
 |gene_id=
-|gene_name=ABCA1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005502
 |nearest_refseq=NM_005502
+|nearest_transcripts=AK311445:162
 |nearest_unigene=Hs.659274
 |peak_score=1