TSS: Rfhg 119297.1: Difference between revisions

Latest revision as of 17:04, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_119297.1
Species:	human
Chr:	chr9

Start:	125632463
End:	125632472
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4239480,EH38E2726959)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	74741
Nearest PromoterID:	NM_001006617
Entrez ID:	79109
Nearest Unigene:	Hs.495138
Nearest Refseq:	NM_024117
Nearest Ensembl:	ENSG00000119487
Gene Name:
Gene Alias:	JC310\|MIP1\|SIN1\|SIN1b\|SIN1g
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001006619, intron 4 of 10)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=MAPK associated protein 1
 |gene_id=
-|gene_name=MAPKAP1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001006617
 |nearest_refseq=NM_024117
+|nearest_transcripts=
 |nearest_unigene=Hs.495138
 |peak_score=1