TSS: Rfhg 119883.1: Difference between revisions

Latest revision as of 17:15, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_119883.1
Species:	human
Chr:	chr9

Start:	128685064
End:	128685081
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4243027,EH38E2729769)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001248000.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000409104.7:2

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_001248000
Entrez ID:	6418
Nearest Unigene:	Hs.436687
Nearest Refseq:	NM_003011
Nearest Ensembl:	ENSG00000119335
Gene Name:
Gene Alias:	2PP2A\|I2PP2A\|IGAAD\|IPP2A2\|MRD58\|PHAPII\|TAF-I\|TAF-IBETA
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001248000.2:0 ENST00000409104.7:2
 |annotation=promoter-TSS (NM_001248000)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=SET nuclear proto-oncogene
 |gene_id=
-|gene_name=SET
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001248000
 |nearest_refseq=NM_003011
+|nearest_transcripts=ENST00000409104.7:2
 |nearest_unigene=Hs.436687
 |peak_score=1