TSS: Rfhg 120220.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000546165.5:0 ENST00000430138.6:0 ENST00000490641.5:0 ENST00000372352.7:0 ENST00000372358.10:0 ENST00000372351.7:0 ENST00000372350.7:0 NM_001282709.1:0 NM_001282708.1:0 NR_104230.1:0 NM_014285.7:0 AK296605:0 AK001916:0 AK090512:0 AK022460:0 AK303163:0 BC000747:1 EU176744:2 DQ892753:2 AB463621:3 ENST00000463488.1:17 ENST00000495699.2:17 ENST00000491115.6:-35
|annotation=promoter-TSS (NM_014285)
|annotation=promoter-TSS (NM_014285)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=exosome component 2
|gene_description=exosome component 2
|gene_id=23404
|gene_id=23404
|gene_name=EXOSC2
|gene_name=exosome component 2
|gene_source=HGNC:17097
|gene_source=HGNC:17097
|gene_symbol=EXOSC2
|gene_symbol=EXOSC2
Line 25: Line 26:
|nearest_promoter_id=NM_014285
|nearest_promoter_id=NM_014285
|nearest_refseq=NM_014285
|nearest_refseq=NM_014285
|nearest_transcripts=BC000747:1 EU176744:2 DQ892753:2 AB463621:3 ENST00000463488.1:17 ENST00000495699.2:17 ENST00000491115.6:-35
|nearest_unigene=Hs.654643
|nearest_unigene=Hs.654643
|peak_score=1
|peak_score=1

Latest revision as of 17:21, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_120220.1
TSS ID(Version3):hg_99032.1
Species:human
Chr:chr9
Start:130693756
End:130693789
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|ENCODE|PRJNA4843412|DRA013844
|PRJDB5282|PRJNA401781|PRJNA615891|PRJNA548673|PRJNA597322
ProtocolCAGE|TSS_database|TSS-seq|NETCAGE|C1CAGE|RAMPAGE
|oligo_capping|SLIC_CAGE|TIF-seq2|ReCappable-seq|STRIPE-seq
TSS cluster detected*16

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4245415,EH38E2731699)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000546165.5:0
ENST00000430138.6:0
ENST00000490641.5:0
ENST00000372352.7:0
ENST00000372358.10:0
ENST00000372351.7:0
ENST00000372350.7:0
AK296605:0
AK001916:0
AK090512:0
AK022460:0
AK303163:0
GeneID:23404
HGNC/MGI_ID:HGNC:17097
UniProt_ID:A3KFL1 A3KFL2 B3KQW2 Q13868
Nearer transcript ids and distances:
  • BC000747:1
  • EU176744:2
  • DQ892753:2
  • AB463621:3
  • ENST00000463488.1:17
  • ENST00000495699.2:17
  • ENST00000491115.6:-35
view more...
Gene_name:exosome component 2
Gene_symbol:EXOSC2
Gene_synonyms:RRP4 Rrp4p hRrp4p p7
Gene_source:HGNC:17097



TATA-Box annotation

Distance to TSS:-8
Nearest PromoterID:NM_014285
Entrez ID:23404
Nearest Unigene:Hs.654643
Nearest Refseq:NM_014285
Nearest Ensembl:ENSG00000130713
Gene Name:exosome component 2
Gene Alias:RRP4|Rrp4p|SHRF|hRrp4p|p7
Gene Type:protein-coding
CpG%:0.090909
GC%:0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_120220.1&oldid=3591866"