TSS: Rfhg 123790.1: Difference between revisions

Latest revision as of 18:26, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_123790.1
Species:	human
Chr:	chr10

Start:	23344741
End:	23344752
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2324428,EH38E1455082)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ901088:-22
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000636213.3:-45 NM_001365862.2:-45 NM_001371909.1:-45 NM_001351306.2:-45 NM_153714.3:-45 ENST00000376501.7:47 ENST00000649478.1:63 ENST00000673651.1:-91 BC035732:-91 ENST00000323327.5:-93 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	51
Nearest PromoterID:	NM_001365862
Entrez ID:	256815
Nearest Unigene:	Hs.132442
Nearest Refseq:	NM_153714
Nearest Ensembl:	ENSG00000179133
Gene Name:
Gene Alias:	C10orf115\|LINC01552
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ901088:-22 ENST00000636213.3:-45 NM_001365862.2:-45 NM_001371909.1:-45 NM_001351306.2:-45 NM_153714.3:-45 ENST00000376501.7:47 ENST00000649478.1:63 ENST00000673651.1:-91 BC035732:-91 ENST00000323327.5:-93
 |annotation=promoter-TSS (NM_001365862)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=chromosome 10 open reading frame 67
 |gene_id=
-|gene_name=C10orf67
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001365862
 |nearest_refseq=NM_153714
+|nearest_transcripts=ENST00000636213.3:-45 NM_001365862.2:-45 NM_001371909.1:-45 NM_001351306.2:-45 NM_153714.3:-45 ENST00000376501.7:47 ENST00000649478.1:63 ENST00000673651.1:-91 BC035732:-91 ENST00000323327.5:-93
 |nearest_unigene=Hs.132442
 |peak_score=1