TSS: Rfhg 126903.1: Difference between revisions

Latest revision as of 19:23, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_126903.1
Species:	human
Chr:	chr10

Start:	73601581
End:	73601594
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2360006,EH38E1478362)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001378209.1:-27
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-10245
Nearest PromoterID:	NR_146997
Entrez ID:	159195
Nearest Unigene:	Hs.657355
Nearest Refseq:	NM_152586
Nearest Ensembl:	ENSG00000166348
Gene Name:
Gene Alias:	C10orf29\|bA137L10.3\|bA137L10.4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.357143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001378209.1:-27
 |annotation=intron (NM_001350995, intron 1 of 21)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=ubiquitin specific peptidase 54
 |gene_id=
-|gene_name=USP54
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_146997
 |nearest_refseq=NM_152586
+|nearest_transcripts=
 |nearest_unigene=Hs.657355
 |peak_score=1