TSS: Rfhg 126930.1: Difference between revisions

Latest revision as of 19:24, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_126930.1
TSS ID(Version3):	hg_110106.1
Species:	human
Chr:	chr10

Start:	73730467
End:	73730518
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2360097,EH38E1478429)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000584747.5:0 BC063124:0 BC099910:0 BC046139:0 AK294783:0
GeneID:	729096
HGNC/MGI_ID:	HGNC:23652
UniProt_ID:
Nearer transcript ids and distances:	ENST00000399449.3:1 BC020053:1 view more...

Gene_name:	BMS1 pseudogene 4
Gene_symbol:	BMS1P4
Gene_synonyms:	OTTHUMG00000018478
Gene_source:	HGNC:23652

TATA-Box annotation

Distance to TSS:	14
Nearest PromoterID:	NR_160426
Entrez ID:	113939925
Nearest Unigene:
Nearest Refseq:	NR_160425
Nearest Ensembl:
Gene Name:	BMS1 pseudogene 4
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.078431
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000580790.1:0 ENST00000584747.5:0 NR_160427.1:0 NR_160425.1:0 NR_160426.1:0 NR_026592.2:0 BC063124:0 BC099910:0 BC046139:0 AK294783:0 ENST00000399449.3:1 BC020053:1
 |annotation=promoter-TSS (NR_026592)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=BMS1P4-AGAP5 readthough
 |gene_id=729096
-|gene_name=BMS1P4-AGAP5
+|gene_name=BMS1 pseudogene 4
 |gene_source=HGNC:23652
 |gene_symbol=BMS1P4
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_160426
 |nearest_refseq=NR_160425
+|nearest_transcripts=ENST00000399449.3:1 BC020053:1
 |nearest_unigene=
 |peak_score=1