TSS: Rfhg 127008.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000624354.3:0 ENST00000372755.7:0 ENST00000478896.2:0 ENST00000211998.10:0 NM_014000.3:0 NM_003373.4:0 AK304823:0 EU794673:0 LF384967:0 MA620544:0 AK300280:0 AK296509:0 LF333168:0 MA568745:0 BC099919:0 BC039174:0 GQ900900:0 M33308:0 AB385172:0 DQ894680:0 LF209953:-20 MA445530:-20
|annotation=promoter-TSS (NM_003373)
|annotation=promoter-TSS (NM_003373)
|ccre_category=N
|ccre_category=N
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|gene_description=vinculin
|gene_description=vinculin
|gene_id=7414
|gene_id=7414
|gene_name=VCL
|gene_name=vinculin
|gene_source=HGNC:12665
|gene_source=HGNC:12665
|gene_symbol=VCL
|gene_symbol=VCL
Line 25: Line 26:
|nearest_promoter_id=NM_003373
|nearest_promoter_id=NM_003373
|nearest_refseq=NM_003373
|nearest_refseq=NM_003373
|nearest_transcripts=LF209953:-20 MA445530:-20
|nearest_unigene=Hs.643896
|nearest_unigene=Hs.643896
|peak_score=1
|peak_score=1

Latest revision as of 19:25, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_127008.1
TSS ID(Version3):hg_105573.1
hg_105574.1
Species:human
Chr:chr10
Start:73998084
End:73998348
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|RAMPAGE|PRJNA401781
|PRJNA615891|PRJNA548673|PRJNA4843412|DRA013844|PRJDB5282
|PRJNA597322
ProtocolCAGE|TSS_database|RAMPAGE|SLIC_CAGE|ReCappable-seq|TIF-seq2
|NETCAGE|C1CAGE|STRIPE-seq|oligo_capping
TSS cluster detected*16

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000624354.3:0
ENST00000372755.7:0
ENST00000478896.2:0
ENST00000211998.10:0
AK304823:0
EU794673:0
AK300280:0
AK296509:0
BC039174:0
GQ900900:0
M33308:0
AB385172:0
DQ894680:0
GeneID:7414
HGNC/MGI_ID:HGNC:12665
UniProt_ID:A0A024QZN4 A0A096LPE1 A0A384NYN5 B4DKC9 B4DTM7 B4E3Q9 V9HWK2
Nearer transcript ids and distances:
  • LF209953:-20
  • MA445530:-20
view more...
Gene_name:vinculin
Gene_symbol:VCL
Gene_synonyms:
Gene_source:HGNC:12665



TATA-Box annotation

Distance to TSS:100
Nearest PromoterID:NM_003373
Entrez ID:7414
Nearest Unigene:Hs.643896
Nearest Refseq:NM_003373
Nearest Ensembl:ENSG00000035403
Gene Name:vinculin
Gene Alias:CMD1W|CMH15|HEL114|MV|MVCL
Gene Type:protein-coding
CpG%:0.121212
GC%:0.667925
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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