TSS: Rfhg 128256.1: Difference between revisions

Latest revision as of 19:47, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_128256.1
Species:	human
Chr:	chr10

Start:	89837231
End:	89837242
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2373666,EH38E1487429)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	DQ578908:458
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	7743
Nearest PromoterID:	NR_038382
Entrez ID:	643529
Nearest Unigene:	Hs.618956
Nearest Refseq:	NR_038382
Nearest Ensembl:	ENSG00000232229
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.090909
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=DQ578908:458
 |annotation=non-coding (NR_038382, exon 4 of 4)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=long intergenic non-protein coding RNA 865
 |gene_id=
-|gene_name=LINC00865
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_038382
 |nearest_refseq=NR_038382
+|nearest_transcripts=
 |nearest_unigene=Hs.618956
 |peak_score=1