TSS: Rfhg 128442.1: Difference between revisions

Latest revision as of 19:51, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_128442.1
Species:	human
Chr:	chr10

Start:	92831101
End:	92831114
Strand:	+

Source datasets

PRJNA401781

Protocol

CAGE|RAMPAGE|oligo_capping

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2376028,EH38E1489047)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001319194.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000672817.1:64 AK300285:64 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001319194
Entrez ID:	54536
Nearest Unigene:	Hs.655657
Nearest Refseq:	NM_019053
Nearest Ensembl:	ENSG00000138190
Gene Name:
Gene Alias:	EXOC6A\|SEC15\|SEC15L\|SEC15L1\|SEC15L3\|Sec15p
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001319194.2:0 ENST00000672817.1:64 AK300285:64
 |annotation=promoter-TSS (NM_001319194)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=exocyst complex component 6
 |gene_id=
-|gene_name=EXOC6
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001319194
 |nearest_refseq=NM_019053
+|nearest_transcripts=ENST00000672817.1:64 AK300285:64
 |nearest_unigene=Hs.655657
 |peak_score=1