TSS: Rfhg 129055.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=KJ899405:-7 ENST00000370546.5:-8 ENST00000614306.1:-8 AJ299720:-8 AK094037:-13 BC112356:-50 ENST00000370552.8:-58 NM_021828.5:-58 ENST00000370549.5:-68 ENST00000628193.2:-68 AJ299719:-68 AF282885:-68 AF282886:-68 AF282887:-68 NM_001166246.1:-81 NM_001166244.1:-81 NM_001166245.1:-81 AK314759:-81 | |||
|annotation=promoter-TSS (NM_001166244) | |annotation=promoter-TSS (NM_001166244) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=heparanase 2 (inactive) | |gene_description=heparanase 2 (inactive) | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001166244 | |nearest_promoter_id=NM_001166244 | ||
|nearest_refseq=NM_021828 | |nearest_refseq=NM_021828 | ||
|nearest_transcripts=ENST00000370546.5:-8 ENST00000614306.1:-8 AJ299720:-8 AK094037:-13 BC112356:-50 ENST00000370552.8:-58 NM_021828.5:-58 ENST00000370549.5:-68 ENST00000628193.2:-68 AJ299719:-68 AF282885:-68 AF282886:-68 AF282887:-68 NM_001166246.1:-81 NM_001166244.1:-81 NM_001166245.1:-81 AK314759:-81 | |||
|nearest_unigene=Hs.500750 | |nearest_unigene=Hs.500750 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 20:02, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2381246,EH38E1492756) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_001166244 |
| Entrez ID: | 60495 |
| Nearest Unigene: | Hs.500750 |
| Nearest Refseq: | NM_021828 |
| Nearest Ensembl: | ENSG00000172987 |
| Gene Name: | |
| Gene Alias: | HPA2|HPR2|UFS|UFS1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.545455 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000370546.5:-8 ENST00000614306.1:-8 AJ299720:-8 AK094037:-13 BC112356:-50 ENST00000370552.8:-58 NM_021828.5:-58 ENST00000370549.5:-68 ENST00000628193.2:-68 AJ299719:-68 AF282885:-68 AF282886:-68 AF282887:-68 NM_001166246.1:-81 NM_001166244.1:-81 NM_001166245.1:-81 AK314759:-81" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.