TSS: Rfhg 129633.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=promoter-TSS (NR_144321) | |annotation=promoter-TSS (NR_144321) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
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|nearest_promoter_id=NR_144321 | |nearest_promoter_id=NR_144321 | ||
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
|peak_score=1 | |peak_score=1 |
Latest revision as of 20:12, 13 March 2025
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | pELS,CTCF-bound (EH38D2384551,EH38E1495230) |
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Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -692 |
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Nearest PromoterID: | NR_144321 |
Entrez ID: | 81603 |
Nearest Unigene: | Hs.336810 |
Nearest Refseq: | NM_030912 |
Nearest Ensembl: | ENSG00000171206 |
Gene Name: | |
Gene Alias: | GERP|RNF27 |
Gene Type: | protein-coding |
CpG%: | 0.100000 |
GC%: | 0.727273 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |